Publications
Pre-print
StomaVision: stomatal trait analysis through deep learning
Ting-Li Wu, Po-Yu Chen, Xiaofei Du, Heiru Wu, Jheng-Yang Ou, Po-Xing Zheng, Yu-Lin Wu, Ruei-Shiuan Wang, Te-Chang Hsu, Chen-Yu Lin, Wei-Yang Lin, Ping-Lin Chang, Chin-Min Kimmy Ho, Yao-Cheng Lin
doi: https://doi.org/10.1101/2024.04.24.590919
Journals
45. Transgene-free CRISPR-/Cas9-mediated gene editing through protoplast-to-plant regeneration enhances active compounds in Salvia miltiorrhiza
Chen-Tran Hsu, Chi-Chou Chiu, Pao-Yuan Hsiao, Chih-Yu Lin, Sychyi Cheng, Yao-Cheng Lin, Yu-Liang Yang, Fu-Hui Wu, Horng-Jyh Harn, Shinn-Zong Lin, Choun-Sea Lin
Plant Biotech. J. 2024 https://doi.org/10.1111/pbi.14285
44. Complete Genome Sequence Resource of Pectobacterium colocasium Strain F1-1 that Causes Soft Rot Disease of Taro
Huang, C.-J., Wu, T.-L., Zheng, P.-X., Ou, J.-Y., Ting, C.-L., Lin, Y.-C.
Plant Disease, 2023 https://doi.org/10.1094/PDIS-09-22-2198-A
43. Whole genome resequencing and complementation tests reveal candidate loci contributing to bacterial wilt (Ralstonia sp.) resistance in tomato.
Barchenger, D. W., Hsu, Y.-M., Ou, J.-Y., Lin, Y.-P., Lin, Y.-C., Balendres, M. A. O., Hsu, Y.-C., Schafleitner, R. & Hanson, P.
Scientific Reports, 12(1), 8374. 2022 https://doi.org/10.1038/s41598-022-12326-x
42. DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato Solanum peruvianum using protoplast regeneration.
Lin, C.-S., Hsu, C.-T., Yuan, Y.-H., Zheng, P.-X., Wu, F.-H., Cheng, Q.-W., Wu, Y.-L., Wu, T.-L., Lin, S., Yue, J.-J., Cheng, Y.-H., Lin, S.-I., Shih, M.-C., Sheen, J. & Lin, Y.-C.
Plant Physiology, 188(4), 1917–1930. 2022 https://doi.org/10.1093/plphys/kiac022
News and Views | Cover Image | First Author Profile | Webinar | 研究成果
41. Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker Bacterium Xanthomonas citri subsp. citri
Huang, C.-J., Wu, T.-L., Zheng, P.-X., Ou, J.-Y., Ni, H.-F. & Lin, Y.-C.
Frontiers in Microbiology, 12, 731711. 2021 https://doi.org/10.3389/fmicb.2021.731711
40. Toward automatic plant phenotyping: starting from leaf counting
Tu, Y.-L., Lin, W.-Y. & Lin, Y.-C.
Multimedia Tools and Applications, 81(9), 11865–11879. 2022 DOI https://doi.org/10.1007/s11042-021-11886-w
39. Efficient and Economical Targeted Insertion in Plant Genomes via Protoplast Regeneration
Hsu, C. T., Yuan, Y. H., Lin, Y. C., Lin, S., Cheng, Q. W., Wu, F. H., Sheen, J., Shih, M. C. & Lin, C. S.
CRISPR J, 4, 752–760. 2021 DOI https://doi.org/10.1089/crispr.2021.0045
38. Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos.
Rodrigues, A. S., Chaves, I.,Costa, B. V., Lin, Y.-C., Lopes, S., Milhinhos, A., Van de Peer, Y., Miguel, C. M.
Scientific Reports 9:11327 2019 DOI 10.1038/s41598-019-47789-y
37. Reference genome for the WHO reference strain for Mycobacterium bovis BCG Danish, the present tuberculosis vaccine
Borgers, K., Ou, J.-Y., Zheng, P.-X.,Tiels, P., Van Hecke, A., Plets, E., Michielsen, G., Festjens, N., Callewaert, N., Lin, Y.-C.
BMC Genomics 20:561 2019 DOI https://doi.org/10.1186/s12864-019-5909-5 | bioRxiv | Supplmentary Information
36. Draft Genome Assembly of the False Spider Mite Brevipalpus yothersi
Navia, D., Novelli, V.M., Rombauts, S., Freitas-Astúa, J., de Mendonça, R.S., Andreia Nunes, M., Machado, M.A., Lin, Y.-C., Le, P., Zhang, Z., Grbić, M., Wybouw, N., Breeuwer, J.A.J., Van Leeuwen, T. and Van de Peer, Y.
Microbiol Resour Announc. 8(6): e01563-18 2019 Feb. DOI 10.1128/MRA.01563-18
35. Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
Lin, Y.-C., Wang, J., Delhomme, N., Schiffthaler, B., Sundström, G., Zuccolo, A., Nystedt, B., Hvidsten, T. R., de la Torre, A., Cossu, R. M., Hoeppner, M. P., Lantz, H., Scofield, D. G., Zamani, N., Johansson, A., Mannapperuma, C., Robinson, K. M., Mähler, N., Leitch, I. J., Pellicer, J., Park, E.-J., Van Montagu, M., Van de Peer, Y., Grabherr, M., Jansson, S., Ingvarsson, P. K. and Street, N. R.
Proc Natl Acad Sci USA 115 (46) E10970-E10978, 2018. DOI https://doi.org/10.1073/pnas.1801437115
34. Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips
Wingfield, B. D., Berger, D. K., Steenkamp, E. T., Lim, H.-J., Duong, T. A., Bluhm, B. H., De Beer, Z. W., De Vos, L., Fourie, G., Naidoo, K,; Olivier, N., Lin, Y.-C., Van der Peer, Y. Joubert, F., Crampton, B. G., Swart, V., Soal, N., Tatham, C., Van der Nest, M. A., Van der Merwe, N. A., van Wyk, S., Wilken, P. M., Wingfield, M. J.
IMA Fungus 8(2): 385–396, 2017. DOI 10.5598/imafungus.2017.08.02.10
33. Complete Genome Sequence of Bacillus cereus C1L, a Plant Growth-Promoting Rhizobacterium from the Rhizosphere of Formosa Lily in Taiwan
Huang, C.-Y., Zheng, P.-X., Ou, J.-Y., Lin, Y.-C., and Chen, C.-Y.,
Genome Announcements, vol. 5, no. 46, 2017. DOI 10.1128/genomeA.01290-17
32. Systems genetics reveals a transcriptional network associated with susceptibility in the maize-grey leaf spot pathosystem.
N. Christie, Myburg, A. A., Joubert, F., Murray, S. L., Carstens, M., Lin, Y.-C., Meyer, J., Crampton, B. G., Christensen, S. A., Ntuli, J. F., Wighard, S. S., Van de Peer, Y., and Berger, D. K.,
Plant J, vol. 89, no. 4, pp. 746-763, 2017. DOI 10.1111/tpj.13419 PubMed ID 27862526
31. The Apostasia genome and the evolution of orchids
Zhang, G.-Q., Liu, K.-W., Li, Z., Lohaus, R., Hsiao, Y.-Y., Niu, S.-C., Wang, J.-Y., Lin, Y.-C., Xu, Q., Chen, L.-J., Yoshida, K., Fujiwara, S., Wang, Z.-W., Zhang, Y.-Q., Mitsuda, N., Wang, M., Liu, G.-H., Pecoraro, L., Huang, H.-X., Xiao, X.-J., Lin, M., Wu, X.-Y., Wu, W.-L., Chen, Y.-Y., Bin Chang, S. -, Sakamoto, S., Ohme-Takagi, M., Yagi, M., Zeng, S.-J., Shen, C.-Y., Yeh, C.-M., Luo, Y.-B., Tsai, W.-C., Van de Peer, Y., and Liu, Z.-J.,
Nature, 548, 379-383, 2017. DOI 10.1038/nature23897
30. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.
Olsen , J. L., Rouzé, P., Verhelst, B., Lin, Y.-C., Bayer, T., Collen, J., Dattolo, E., De Paoli, E., Dittami, S., Maumus, F., Michel, G., Kersting, A., Lauritano, C., Lohaus, R., Töpel, M., Tonon, T., Vanneste, K., Amirebrahimi, M., Brakel, J., Boström, C., Chovatia, M., Grimwood, J., Jenkins, J. W., Jueterbock, A., Mraz, A., Stam, W. T., Tice, H., Bornberg-Bauer, E., Green, P. J., Pearson, G. A., Procaccini, G., Duarte, C. M., Schmutz, J., Reusch, T. B. H., and Van de Peer, Y.,
Nature, vol. 530, no. 7590, pp. 331-5, 2016. DOI 10.1038/nature16548 PubMed ID 26814964
29. Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda).
S. Sachin Ranade, Lin, Y.-C., Van de Peer, Y., and García-Gil, M. Rosario,
BMC Genet, vol. 16, p. 149, 2015. DOI 10.1186/s12863-015-0304-y PubMed ID 26706685
28. Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies).
N. Delhomme, Sundström, G., Zamani, N., Lantz, H., Lin, Y.-C., Hvidsten, T. R., Höppner, M. P., Jern, P., Van de Peer, Y., Lundeberg, J., Grabherr, M. G., and Street, N. R.,
PLoS One, vol. 10, no. 9, p. e0139080, 2015. DOI 10.1371/journal.pone.0139080 PubMed ID 26413905
27. Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays.
S. Ghorbani, Lin, Y.-C., Parizot, B., Fernandez, A., Njo, M. Fransiska, Van de Peer, Y., Beeckman, T., and Hilson, P.,
J Exp Bot, vol. 66, no. 17, pp. 5257-69, 2015. DOI 10.1093/jxb/erv346 PubMed ID 26195730
26. The Plant Genome Integrative Explorer Resource: PlantGenIE.org.
D. Sundell, Mannapperuma, C., Netotea, S., Delhomme, N., Lin, Y.-C., Sjödin, A., Van de Peer, Y., Jansson, S., Hvidsten, T. R., and Street, N. R.,
New Phytol, vol. 208, no. 4, pp. 1149-56, 2015. DOI 10.1111/nph.13557 PubMed ID 26192091
25. Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in picea gene families.
A. R. De La Torre, Lin, Y.-C., Van de Peer, Y., and Ingvarsson, P. K.,
Genome Biol Evol, vol. 7, no. 4, pp. 1002-15, 2015. DOI 10.1093/gbe/evv044 PubMed ID 25747252
24. Comparative in silico analysis of EST-SSRs in angiosperm and gymnosperm tree genera.
S. Sachin Ranade, Lin, Y.-C., Zuccolo, A., Van de Peer, Y., and García-Gil, Mdel Rosari,
BMC Plant Biol, vol. 14, p. 220, 2014. DOI10.1186/s12870-014-0220-8 PubMed ID 25143005
23. miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns.
I. Chaves, Lin, Y.-C., Pinto-Ricardo, C., Van de Peer, Y., and Miguel, C.,
Tree Genetics & Genomes, vol. 10, no. 3, pp. 721-737, 2014. link
22. Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations.
Y.-C. Lin, Boone, M., Meuris, L., Lemmens, I., Van Roy, N., Soete, A., Reumers, J., Moisse, M., Plaisance, S., Drmanac, R., Chen, J., Speleman, F., Lambrechts, D., Van de Peer, Y., Tavernier, J., and Callewaert, N.,
Nat Commun, vol. 5, p. 4767, 2014. DOI 10.1038/ncomms5767 PubMed ID 25182477
21. Pan genome of the phytoplankton Emiliania underpins its global distribution.
B. A. Read, Kegel, J., Klute, M. J., Kuo, A., Lefebvre, S. C., Maumus, F., Mayer, C., Miller, J., Monier, A., Salamov, A., Young, J., Aguilar, M., Claverie, J.-M., Frickenhaus, S., Gonzalez, K., Herman, E. K., Lin, Y.-C., Napier, J., Ogata, H., Sarno, A. F., Shmutz, J., Schroeder, D., de Vargas, C., Verret, F., von Dassow, P., Valentin, K., Van de Peer, Y., Wheeler, G., Dacks, J. B., Delwiche, C. F., Dyhrman, S. T., Glöckner, G., John, U., Richards, T., Worden, A. Z., Zhang, X., and Grigoriev, I. V.,
Nature, vol. 499, no. 7457, pp. 209-13, 2013. DOI 10.1038/nature12221 PubMed ID 23760476
20. The Norway spruce genome sequence and conifer genome evolution.
B. Nystedt, Street, N. R., Wetterbom, A., Zuccolo, A., Lin, Y.-C., Scofield, D. G., Vezzi, F., Delhomme, N., Giacomello, S., Alexeyenko, A., Vicedomini, R., Sahlin, K., Sherwood, E., Elfstrand, M., Gramzow, L., Holmberg, K., Hällman, J., Keech, O., Klasson, L., Koriabine, M., Kucukoglu, M., Käller, M., Luthman, J., Lysholm, F., Niittylä, T., Olson, A., Rilakovic, N., Ritland, C., Rosselló, J. A., Sena, J., Svensson, T., Talavera-López, C., Theißen, G., Tuominen, H., Vanneste, K., Wu, Z.-Q., Zhang, B., Zerbe, P., Arvestad, L., Bhalerao, R., Bohlmann, J., Bousquet, J., Gil, R. Garcia, Hvidsten, T. R., de Jong, P., MacKay, J., Morgante, M., Ritland, K., Sundberg, B., Thompson, S. Lee, Van de Peer, Y., Andersson, B., Nilsson, O., Ingvarsson, P. K., Lundeberg, J., and Jansson, S.,
Nature, vol. 497, no. 7451, pp. 579-84, 2013. DOI 10.1038/nature12211 PubMed ID 23698360
19. SILAC-based proteome analysis of Starmerella bombicola sophorolipid production.
K. Ciesielska, Li, B., Groeneboer, S., Van Bogaert, I., Lin, Y.-C., Soetaert, W., Van de Peer, Y., and Devreese, B.,
J Proteome Res, vol. 12, no. 10, pp. 4376-92, 2013. DOI 10.1021/pr400392a PubMed ID 23964782
18. Candida bombicola as a platform organism for the production of tailor-made biomolecules.
S. L. K. W. Roelants, Saerens, K. M. J., Derycke, T., Li, B., Lin, Y.-C., Van de Peer, Y., De Maeseneire, S. L., Van Bogaert, I. N. A., and Soetaert, W.,
Biotechnol Bioeng, vol. 110, no. 9, pp. 2494-503, 2013. DOI 10.1002/bit.24895 PubMed ID 23475585
17. The biosynthetic gene cluster for sophorolipids: a biotechnological interesting biosurfactant produced by Starmerella bombicola.
I. N. A. Van Bogaert, Holvoet, K., Roelants, S. L. K. W., Li, B., Lin, Y.-C., Van de Peer, Y., and Soetaert, W.,
Mol Microbiol, vol. 88, no. 3, pp. 501-9, 2013. DOI 10.1111/mmi.12200 PubMed ID 23516968
16. A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust).
S. Hacquard, Joly, D. L., Lin, Y.-C., Tisserant, E., Feau, N., Delaruelle, C., Legué, V., Kohler, A., Tanguay, P., Petre, B., Frey, P., Van de Peer, Y., Rouzé, P., Martin, F., Hamelin, R. C., and Duplessis, S.,
Mol Plant Microbe Interact, vol. 25, no. 3, pp. 279-93, 2012. DOI 10.1094/MPMI-09-11-0238 PubMed ID 22046958
15. GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses.
R. Whitford, Fernandez, A., Tejos, R., Pérez, A. Cuéllar, Kleine-Vehn, J., Vanneste, S., Drozdzecki, A., Leitner, J., Abas, L., Aerts, M., Hoogewijs, K., Baster, P., De Groodt, R., Lin, Y.-C., Storme, V., Van de Peer, Y., Beeckman, T., Madder, A., Devreese, B., Luschnig, C., Friml, J., and Hilson, P.,
Dev Cell, vol. 22, no. 3, pp. 678-85, 2012. DOI 10.1016/j.devcel.2012.02.002 PubMed ID 22421050
14. Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.
A. Olson, Aerts, A., Asiegbu, F., Belbahri, L., Bouzid, O., Broberg, A., Canbäck, B., Coutinho, P. M., Cullen, D., Dalman, K., Deflorio, G., van Diepen, L. T. A., Dunand, C., Duplessis, S., Durling, M., Gonthier, P., Grimwood, J., Fossdal, C. Gunnar, Hansson, D., Henrissat, B., Hietala, A., Himmelstrand, K., Hoffmeister, D., Högberg, N., James, T. Y., Karlsson, M., Kohler, A., Kües, U., Lee, Y.-H., Lin, Y.-C., Lind, M., Lindquist, E., Lombard, V., Lucas, S., Lundén, K., Morin, E., Murat, C., Park, J., Raffaello, T., Rouzé, P., Salamov, A., Schmutz, J., Solheim, H., Ståhlberg, J., Vélëz, H., de Vries, R. P., Wiebenga, A., Woodward, S., Yakovlev, I., Garbelotto, M., Martin, F., Grigoriev, I. V., and Stenlid, J.,
New Phytol, vol. 194, no. 4, pp. 1001-13, 2012. DOI 10.1111/j.1469-8137.2012.04128.x PubMed ID 22463738
13. Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.
E. Chancerel, Lepoittevin, C., Le Provost, G., Lin, Y.-C., Jaramillo-Correa, J. Pablo, Eckert, A. J., Wegrzyn, J. L., Zelenika, D., Boland, A., Frigerio, J.-M., Chaumeil, P., Garnier-Géré, P., Boury, C., Grivet, D., González-Martínez, S. C., Rouzé, P., Van de Peer, Y., Neale, D. B., Cervera, M. T., Kremer, A., and Plomion, C.,
BMC Genomics, vol. 12, p. 368, 2011. DOI 10.1186/1471-2164-12-368 PubMed ID 21767361
12. Obligate biotrophy features unraveled by the genomic analysis of rust fungi.
S. Duplessis, Cuomo, C. A., Lin, Y.-C., Aerts, A., Tisserant, E., Veneault-Fourrey, C., Joly, D. L., Hacquard, S., Amselem, J., Cantarel, B. L., Chiu, R., Coutinho, P. M., Feau, N., Field, M., Frey, P., Gelhaye, E., Goldberg, J., Grabherr, M. G., Kodira, C. D., Kohler, A., Kües, U., Lindquist, E. A., Lucas, S. M., Mago, R., Mauceli, E., Morin, E., Murat, C., Pangilinan, J. L., Park, R., Pearson, M., Quesneville, H., Rouhier, N., Sakthikumar, S., Salamov, A. A., Schmutz, J., Selles, B., Shapiro, H., Tanguay, P., Tuskan, G. A., Henrissat, B., Van de Peer, Y., Rouzé, P., Ellis, J. G., Dodds, P. N., Schein, J. E., Zhong, S., Hamelin, R. C., Grigoriev, I. V., Szabo, L. J., and Martin, F.,
Proc Natl Acad Sci U S A, vol. 108, no. 22, pp. 9166-71, 2011. DOI 10.1073/pnas.1019315108 PubMed ID 21536894
11. Oil bodies and oleosins in Physcomitrella possess characteristics representative of early trends in evolution.
C.-Y. Huang, Chung, C.-I., Lin, Y.-C., Hsing, Y.-I. Caroline, and Huang, A. H. C.,
Plant Physiol, vol. 150, no. 3, pp. 1192-203, 2009. DOI 10.1104/pp.109.138123 PubMed ID 19420327
10. Genome sequence of the recombinant protein production host Pichia pastoris.
K. De Schutter, Lin, Y.-C., Tiels, P., Van Hecke, A., Glinka, S., Weber-Lehmann, J., Rouzé, P., Van de Peer, Y., and Callewaert, N.,
Nat Biotechnol, vol. 27, no. 6, pp. 561-6, 2009. DOI 10.1038/nbt.1544 PubMed ID 19465926
9. Open access to sequence: browsing the Pichia pastoris genome.
D. Mattanovich, Callewaert, N., Rouzé, P., Lin, Y.-C., Graf, A., Redl, A., Tiels, P., Gasser, B., and De Schutter, K.,
Microb Cell Fact, vol. 8, p. 53, 2009. DOI 10.1186/1475-2859-8-53 PubMed ID 19835590
8. The Rice Annotation Project Database (RAP-DB): 2008 update.
T. Tanaka, Antonio, B. A., Kikuchi, S., Matsumoto, T., Nagamura, Y., Numa, H., Sakai, H., Wu, J., Itoh, T., Sasaki, T., Aono, R., Fujii, Y., Habara, T., Harada, E., Kanno, M., Kawahara, Y., Kawashima, H., Kubooka, H., Matsuya, A., Nakaoka, H., Saichi, N., Sanbonmatsu, R., Sato, Y., Shinso, Y., Suzuki, M., Takeda, J. -ichi, Tanino, M., Todokoro, F., Yamaguchi, K., Yamamoto, N., Yamasaki, C., Imanishi, T., Okido, T., Tada, M., Ikeo, K., Tateno, Y., Gojobori, T., Lin, Y.-C., Wei, F.-J., Hsing, Y.-I., Zhao, Q., Han, B., Kramer, M. R., McCombie, R. W., Lonsdale, D., O’Donovan, C. C., Whitfield, E. J., Apweiler, R., Koyanagi, K. O., Khurana, J. P., Raghuvanshi, S., Singh, N. K., Tyagi, A. K., Haberer, G., Fujisawa, M., Hosokawa, S., Ito, Y., Ikawa, H., Shibata, M., Yamamoto, M., Bruskiewich, R. M., Hoen, D. R., Bureau, T. E., Namiki, N., Ohyanagi, H., Sakai, Y., Nobushima, S., Sakata, K., Barrero, R. A., Sato, Y., Souvorov, A., Smith-White, B., Tatusova, T., An, S., An, G., Oota, S., Fuks, G., Fuks, G., Messing, J., Christie, K. R., Lieberherr, D., Kim, H. R., Zuccolo, A., Wing, R. A., Nobuta, K., Green, P. J., Lu, C., Meyers, B. C., Chaparro, C., Piegu, B., Panaud, O., and Echeverria, M.,
Nucleic Acids Res, vol. 36, no. Database issue, pp. D1028-33, 2008. DOI 10.1093/nar/gkm978 PubMed ID 18089549
7. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.
F. Martin, Aerts, A., Ahrén, D., Brun, A., Danchin, E. G. J., Duchaussoy, F., Gibon, J., Kohler, A., Lindquist, E., Pereda, V., Salamov, A., Shapiro, H. J., Wuyts, J., Blaudez, D., Buée, M., Brokstein, P., Canbäck, B., Cohen, D., Courty, P. E., Coutinho, P. M., Delaruelle, C., Detter, J. C., Deveau, A., DiFazio, S., Duplessis, S., Fraissinet-Tachet, L., Lucic, E., Frey-Klett, P., Fourrey, C., Feussner, I., Gay, G., Grimwood, J., Hoegger, P. J., Jain, P., Kilaru, S., Labbé, J., Lin, Y.-C., Legué, V., Le Tacon, F., Marmeisse, R., Melayah, D., Montanini, B., Muratet, M., Nehls, U., Niculita-Hirzel, H., Le Secq, M. P. Oudot-, Peter, M., Quesneville, H., Rajashekar, B., Reich, M., Rouhier, N., Schmutz, J., Yin, T., Chalot, M., Henrissat, B., Kües, U., Lucas, S., Van de Peer, Y., Podila, G. K., Polle, A., Pukkila, P. J., Richardson, P. M., Rouzé, P., Sanders, I. R., Stajich, J. E., Tunlid, A., Tuskan, G., and Grigoriev, I. V.,
Nature, vol. 452, no. 7183, pp. 88-92, 2008. DOI 10.1038/nature06556 PubMed ID 18322534
6. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
T. Itoh, Tanaka, T., Barrero, R. A., Yamasaki, C., Fujii, Y., Hilton, P. B., Antonio, B. A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., de Oliveira, A. Costa, Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A. T., Hirochika, H., Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y.-I., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, J. P., Kikuchi, S., Komatsu, S., Koyanagi, K. O., Kubooka, H., Lieberherr, D., Lin, Y.-C., Lonsdale, D., Matsumoto, T., Matsuya, A., W McCombie, R., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O’Donovan, C., Ohyanagi, H., Okido, T., Oota, S., Osato, N., Palmer, L. E., Quetier, F., Raghuvanshi, S., Saichi, N., Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, N. K., Smith-White, B., Takeda, J. -ichi, Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, A. K., Vanavichit, A., Wang, A., Wing, R. A., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T., and Sasaki, T.,
Genome Res, vol. 17, no. 2, pp. 175-83, 2007. DOI 10.1101/gr.5509507 PubMed ID 17210932
5. A rice gene activation/knockout mutant resource for high throughput functional genomics.
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International Symposium on Computer, Consumer and Control (IS3C) 2020 https://doi.org/10.1109/IS3C50286.2020.00058
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